datasets

pyrnaither.data.datasets.generate_dataset_file(external_experiment_name, type_of_data, comments, output_file, plate_layout_internal, plate_layout_ncbi, nb_rows_per_plate, nb_cols_per_plate, screen_nb_pre, empty_wells, poor_wells, control_coords_output, background_val_output, mean_signal_output, sd_mean_signal, obj_num_output, cell_num_output)[source]

Generate a dataset file from the given data.

Return type:

None

Parameters:

  • external_experiment_name (str)

  • type_of_data (str)

  • comments (str)

  • output_file (str)

  • plate_layout_internal (DataFrame)

  • plate_layout_ncbi (DataFrame)

  • nb_rows_per_plate (int)

  • nb_cols_per_plate (int)

  • screen_nb_pre (int)

  • empty_wells (List[List[int]])

  • poor_wells (List[List[int]])

  • control_coords_output (List[List[List[int]]])

  • background_val_output (List[ndarray])

  • mean_signal_output (List[ndarray])

  • sd_mean_signal (List[ndarray])

  • obj_num_output (List[ndarray])

  • cell_num_output (List[ndarray])

Args:

external_experiment_name: Name of the external experiment. type_of_data: Type of data. comments: Comments. output_file: Output file. plate_layout_internal: Plate layout internal. plate_layout_ncbi: Plate layout NCBI. nb_rows_per_plate: Number of rows per plate. nb_cols_per_plate: Number of columns per plate. screen_nb_pre: Screen number pre. empty_wells: Empty wells. poor_wells: Poor wells. control_coords_output: Control coordinates output. background_val_output: Background value output. mean_signal_output: Mean signal output. sd_mean_signal: SD mean signal. obj_num_output: Object number output. cell_num_output: Cell number output.

Returns:

None