pyrnaither.stats package

Submodules

• pyrnaither.stats.qc module
  • compare_replica_plates()
  • compare_replicate_sd()
  • compare_replicate_sd_per_screen()
  • compare_replicates()
  • control_density()
  • control_density_per_plate()
  • control_density_per_screen()
  • discard_labtek()
  • discard_wells()
  • dr_qual_control()
  • dynamic_range()
  • make_boxplot_4_plate_type()
  • make_boxplot_controls()
  • make_boxplot_controls_per_plate()
  • make_boxplot_controls_per_screen()
  • make_boxplot_per_plate()
  • make_boxplot_per_screen()
  • num_cell_qual_control()
  • perc_cell_qual_control()
  • plot_control_histo()
  • plot_control_histo_per_plate()
  • plot_histo()
  • plot_histo_per_plate()
  • plot_histo_per_screen()
  • plot_qq()
  • plot_qq_per_plate()
  • plot_qq_per_screen()
  • read_dataset_with_header()
  • replicates_cv()
  • replicates_spearman_cor()
  • snr_qual_control()
  • spatial_distrib()
  • z_prime()
  • zprime_qual_control()
• pyrnaither.stats.qc_todo module
  • PdfPages()
  • generate_replicate_matrix()
  • summarize_reps_no_filtering()
• pyrnaither.stats.stattests module
  • compare_hits()
  • hit_selection_pval()
  • hit_selection_zscore()
  • hit_selection_zscore_pval()
  • incorporate_pval_vec()
  • mann_whitney()
  • mult_test_adjust()
  • rank_product()
  • spatial_distrib_hits()
  • t_test()
  • venn_diag()
  • volcano_plot()
• pyrnaither.stats.stattests_todo module
  • order_gene_ids()

Module contents