Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | P | R | S | T | U | V | W | Y _ __init__() (litsync.config.Config method) (litsync.extract.ShardWriter method) (litsync.extract_state.ExtractState method) (litsync.http.HttpClient method) (litsync.sources.clinicaltrials.ClinicalTrialsSource method) (litsync.sources.fda.FdaSource method) (litsync.sources.pmc.PmcSource method) (litsync.sources.pubmed.PubMedSource method) (litsync.sources.Task method) (litsync.state.FileRecord method) (litsync.state.StateDB method) (litsync.sync.Syncer method) A all_sources() (litsync.state.StateDB method) attempts (litsync.state.FileRecord attribute) B backfill_counts() (litsync.sync.Syncer method) backoff_base (litsync.config.Config attribute) C clean() (in module litsync.extract) ClinicalTrialsSource (class in litsync.sources.clinicaltrials) close() (litsync.extract.ShardWriter method) (litsync.extract_state.ExtractState method) (litsync.state.StateDB method) Config (class in litsync.config) count_articles (litsync.config.Config attribute) count_articles() (in module litsync.utils) current_shard (litsync.extract.ShardWriter property) D data_root (litsync.config.Config attribute) db_path (litsync.config.Config property) dest (litsync.sources.Task attribute) done_count() (litsync.extract_state.ExtractState method) download() (litsync.http.HttpClient method) dry_run (litsync.config.Config attribute) E email (litsync.config.Config attribute) error (litsync.state.FileRecord attribute) etag (litsync.state.FileRecord attribute) extract (litsync.sources.Task attribute) extract() (litsync.ui.RichUI method) (litsync.ui.UI method) extract_progress() (litsync.ui.RichUI method) (litsync.ui.UI method) extract_summary() (litsync.ui.RichUI method) (litsync.ui.UI method) ExtractState (class in litsync.extract_state) F fda_endpoints (litsync.config.Config attribute) FdaSource (class in litsync.sources.fda) filename (litsync.sources.Task attribute) (litsync.state.FileRecord attribute) FileRecord (class in litsync.state) files_missing_counts() (litsync.state.StateDB method) find_local() (in module litsync.extract) findall_local() (in module litsync.extract) G get() (litsync.state.StateDB method) get_text() (litsync.http.HttpClient method) H head() (litsync.http.HttpClient method) HttpClient (class in litsync.http) human_bytes() (in module litsync.utils) I immutable (litsync.sources.Task attribute) is_done() (litsync.extract_state.ExtractState method) iter_source_files() (in module litsync.extract) K known_filenames() (litsync.state.StateDB method) L list_dir() (litsync.http.HttpClient method) litsync.config module litsync.extract module litsync.extract_state module litsync.http module litsync.sources module litsync.sources.clinicaltrials module litsync.sources.fda module litsync.sources.pmc module litsync.sources.pubmed module litsync.state module litsync.sync module litsync.ui module litsync.utils module local_md5 (litsync.state.FileRecord attribute) local_tag() (in module litsync.extract) lock_path (litsync.config.Config property) log_dir (litsync.config.Config property) M mark() (litsync.state.StateDB method) mark_done() (litsync.extract_state.ExtractState method) max_end_shard() (litsync.extract_state.ExtractState method) max_retries (litsync.config.Config attribute) md5 (litsync.state.FileRecord attribute) md5_file() (in module litsync.utils) md5_file_from_url() (in module litsync.sync) md5_url (litsync.sources.Task attribute) module litsync.config litsync.extract litsync.extract_state litsync.http litsync.sources litsync.sources.clinicaltrials litsync.sources.fda litsync.sources.pmc litsync.sources.pubmed litsync.state litsync.sync litsync.ui litsync.utils N new_src_stats() (in module litsync.ui) (in module litsync.utils) P parse_clinicaltrials_xml_file() (in module litsync.extract) parse_fda_json_file() (in module litsync.extract) parse_md5() (in module litsync.utils) parse_pmc_article() (in module litsync.extract) parse_pmc_tar() (in module litsync.extract) parse_pubmed() (in module litsync.extract) partial_note() (in module litsync.utils) plan() (litsync.sources.clinicaltrials.ClinicalTrialsSource method) (litsync.sources.fda.FdaSource method) (litsync.sources.pmc.PmcSource method) (litsync.sources.pubmed.PubMedSource method) planned() (litsync.ui.RichUI method) (litsync.ui.UI method) planning() (litsync.ui.RichUI method) (litsync.ui.UI method) pmc_formats (litsync.config.Config attribute) pmc_groups (litsync.config.Config attribute) PmcSource (class in litsync.sources.pmc) print_banner() (in module litsync.ui) prune (litsync.config.Config attribute) pubmed_year() (in module litsync.extract) PubMedSource (class in litsync.sources.pubmed) R rel_path (litsync.sources.Task attribute) (litsync.state.FileRecord attribute) remote_mtime (litsync.state.FileRecord attribute) remote_size (litsync.state.FileRecord attribute) reverify (litsync.config.Config attribute) RichUI (class in litsync.ui) roll() (litsync.extract.ShardWriter method) run() (litsync.sync.Syncer method) run_extraction() (in module litsync.extract) run_lock() (in module litsync.utils) run_progress() (litsync.ui.RichUI method) (litsync.ui.UI method) S ShardWriter (class in litsync.extract) source (litsync.sources.Task attribute) (litsync.state.FileRecord attribute) sources (litsync.config.Config attribute) state_dir (litsync.config.Config property) StateDB (class in litsync.state) status (litsync.state.FileRecord attribute) SUFFIX (litsync.sources.pubmed.PubMedSource attribute) summary() (litsync.state.StateDB method) (litsync.ui.RichUI method) (litsync.ui.UI method) summary_by_source() (litsync.state.StateDB method) Syncer (class in litsync.sync) T Task (class in litsync.sources) text() (in module litsync.extract) timeout (litsync.config.Config attribute) U UI (class in litsync.ui) upsert_seen() (litsync.state.StateDB method) url (litsync.sources.Task attribute) (litsync.state.FileRecord attribute) utcnow() (in module litsync.utils) V verbose (litsync.config.Config attribute) W workers (litsync.config.Config attribute) write() (litsync.extract.ShardWriter method) write_json_manifest() (litsync.sync.Syncer method) Y year_shards_for_file() (litsync.extract_state.ExtractState method)